rs36492593 SNP Detail

Summary

• ID
  rs36492593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86964033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAATATCC TAATAGCTAA
  TTTTCCCTAA AGTAAGTTAA TTTTTACTTA GTGAAAGAGA TGGCTGTCTA TTGGTAGTAG
  GCTAGCATGG CAGCCAGAAC TTCTTGGGCA AAAATGTTGG TTTGGAACCA GCAGCATCTC
  TGCAGTGTGC TGCCCCTAGT GTGGTGTGCA TGGAGTGAGC TTTCGGTGGG AGGTGGTAGC
  R
  CGGTGGTTAT ATTTAGAAAT CAACATGTAA GACTTTTAAA TATGAGATGT TCCTTCTCTG
  GGTTTCTTTG TTTTCCTTTT TCTCCTTCAC TTGCTCTGCA CATCTAACCC TAACCCTCTG
  TTTTGTACTG AATCCTGTCT TTCCGCTTCC AGGTGGGCAC TCTAGGAACA GCAGTGGGAG
  CTCTGAGTCC AGTCTTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51746803	NES14796129	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36492593					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746803	NES14796129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86964033 () rs orientation: forward

Symbol	Name	Function Class
Aak1	AP2 associated kinase 1	Intron
Rr633566	regulatory region 633566	1525 bp distal
Rr633567	regulatory region 633567	1858 bp proximal