rs36490701 SNP Detail

Summary

• ID
  rs36490701
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15182567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAATTAT GTCTGTTCTG
  AGTAACATCT GTGTCACAGG AAATCATCAC CAGTCTCTTG CAAGGAGCAT GCTAATAGGC
  TAATTCATCG TCAAGAAATT CAAAGATGTT TAAGGTTTTT GCTATTAGAA AGAAGAAGAG
  ATTATAACAA GACAAAGGAA AAAAACATAA TATTCTGGTT TACAACCTGT TTCTGAAATC
  R
  TCACTGCCCT TTTGGAAGAC CTAAGTTAAG GTTTTTCCAC TGGGTGATAG CATCCCCTGA
  CCACATACCT TGCCACGGGG GTTATAAAAT AAAAGGGGCT TTATTATCTA AGGTAATGTA
  GTTACAGTCT CTTATGTTAG GTAGATTTTG GTTGTGAAAA CTGGCATGGA GAATCTATCA
  TTTTCTTCAA TAACCTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51242633	NES13801341	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36490701					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242633	NES13801341	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15182567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			211 bp proximal
Rr626647	regulatory region 626647			1589 bp proximal