rs36488969 SNP Detail

Summary

• ID
  rs36488969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24607074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCACTAT TTTCATCCTT
  TCCATTAGTG TGCAAAACCA TGTTTTATTT AGGGTTAGAG GTGTATGCAC GTTTGTATAT
  AAAACTCCAG AACGGAAAAC TAGACCCTCC TTTTTCCTGA CCTTTGCTTG CAGAGACAGG
  CTGTAGTTAA GGGGAGGAGT GAGGGAGAAG AGGCAGAGGA GGAAAAGGTG CTGGTAAACG
  R
  CTTAATTAGT AAGACCACAC AGGGCTCCGC GAAGGAGGAG GAGCATCCGA CAGTGTTTGT
  GTTACCGGAA AATGTTTACC TTGTGGAGGA TGGATAAGTC TTCTCCCCAG AAGCAAGTGC
  CTAGAAGATA AGTTTCCTCT TCGTATTGTC TTGCTAGATC TTTGTGAACC TTAGGATGAC
  AAAAACGACT TCCAAGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51253633	NES13798866	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36488969					SNP	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51253633	NES13798866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24607074 () rs orientation: forward

Symbol	Name	Function Class
Lmod2	leiomodin 2 (cardiac)	1661 bp downstream
Rr627250	regulatory region 627250	438 bp distal
Rr627251	regulatory region 627251	398 bp proximal
Rr627252	regulatory region 627252	1069 bp proximal