rs36486230 SNP Detail

Summary

• ID
  rs36486230
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84551661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCAGGT CCGCACGCCA
  CCGCCAAACG GGAGGTAATG GAAGCGGCCA TCCTTATCCT CACTGCGTGC CTGACTGAAG
  CGGTCCGGGT CAAACACATT CACGTCCTTG AACACGGGCG CTGTGTCGTG AGTGTCTCGG
  ATGCTATACA TGACACTCCA GCCCTTGGGG ATCTGGAAAC CCTGGAGGAA GACCGGACAG
  W
  GGGTGGTAAG AGCCTAGAGG TCCACTTACC TGTCCGAATT CTCATATGCA CAAGGCCTGT
  CCCTAACCAA AGTCACTCCC CCAGAATGCT AGATCAAGTC TCCATATCTA TAGATCACAG
  GAGCATCCCA ACTGGCACAC AGGTTGGCTT CACTCAGCTC TGCATTTAGG GTGAAGCCTC
  TCCCACAGGA CTGAAAGCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51731944	NES14800485	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36486230					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51731944	NES14800485	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84551661 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17625	CpG island 17625	53 bp distal
Cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	Intron
Rr633066	regulatory region 633066	563 bp distal