rs36485739 SNP Detail

Summary

• ID
  rs36485739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:84041316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTTGTG CAAGCTATGG
  AAGCAGCCTG CCACTGAGCT ACACCCTTAG CTACACCCTT TTATGAGAAA GAGATGCTAA
  TTTCCTTTAG GCGTTGAGCC CAAATAAGAA TGTATGATTG AAGTTTAAGG GAAGCCACTG
  ACTGAGAAAA GCATTAAGGG AAACACTTCT GTCCTACAAA GCACATCTCT TCATAAGGCG
  R
  TGACTTACCT GAGAGTTCAG AGCCTCCAAC TTGCGCTTCC TGGCATGAAG AGCCTTGCTC
  GGAAAAGCCC AATAGTAATT GGACGTCCCG ATCCTCTCGC AGTCAACCAT ACCGTCATCC
  ACTAGGCTCT GAAGGACTTC CTTCACTGAC ATGGCGGCTG GGGAGAAAAC GTTCACAGAC
  GCTAAGTTAA GCAGCATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss51568523	NES14672535	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs36485739					SNP	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51568523	NES14672535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84041316 () rs orientation: forward

Symbol	Name	Function Class
Mnd1	meiotic nuclear divisions 1	Intron
Rr578991	regulatory region 578991	1377 bp proximal