rs36485731 SNP Detail

Summary

• ID
  rs36485731
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86772112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCTTTC TGAGCTCTGA
  CAGGTGACAT GCGACTTCTT CCAACAGATG GCAGGCTCTC CTGGGAATGC CCAGGAGTGC
  ACTAACAGGG CATCTGCATC TTGTCTTACT TCTGGGGACC TGATCTAACC CAGAGCGACA
  AAACAATGAA TAGAGCTGTT CAACTTAAGG ACTCAGACTT CACACTAAAG ATATCAAAAT
  K
  AGGCACCACC AGGCACACAC ATGATGTACC TGCACACTTG CAGACAAAGT ACTTGTATAC
  ATAAAGTAAA ACAATAATTT TTTTATAAAT ATGAGAAGAG CGCCAGGCAG TGGTGGCGCA
  CGCCTTTGAT CCCAGCCCTT GGGAGGCAGA GGCAGGCAGA TTTCTGAGTT CAAGGTCAGC
  CTGGTCTACA GAGTGAGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51749398	NES14799927	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36485731					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749398	NES14799927	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86772112 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	1546 bp upstream
Cpgi17670	CpG island 17670	1257 bp distal
Rr633515	regulatory region 633515	1557 bp distal
Rr633516	regulatory region 633516	1056 bp distal
Rr633517	regulatory region 633517	143 bp distal
Tssr61864	transcription start site region 61864	1548 bp upstream
Tssr61865	transcription start site region 61865	1529 bp upstream
Tssr61866	transcription start site region 61866	562 bp downstream
Tssr61867	transcription start site region 61867	1438 bp downstream