rs36484716 SNP Detail

Summary

• ID
  rs36484716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTGAAAC TTTCTCTTTT
  TCCTGCCACA AGGATTCGCC ATAGCTTCCC CTGTACTGCC TGGCTCCCCA GATCACAAAC
  CAATTCTCCC AAAGCCTGTG GCTTCACCGC CCGCCACTGG CATTTCAGGG CCACGGACCA
  CACAAATGGT GGCAGGTGAG TTCTGGATGA AGTACGACCA GCTCTGACAT TCAGCAAGCA
  Y
  CAAGCCTGCA ATCCATGAAA TGGGTTCAGA CATGACCCCT TTCTCAAACA GGAAGGGCAA
  GGTAGAAAGT GGGGCCCTGT GGCTCTGTCC TGTGGCTCTG TCCTGTGGCT CTGTCCTGCG
  GTTCTGACCC TGTGGCTCTG TCCTGCGGTT CTGTCCTGCG GTTCTGTCCT GCGGTTCTGT
  CCTGTGGCTC TGTCCTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50810536	NES14204867	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C		T	T		C	T	T	C		T
ss146766658	ENSMUSSNP1953513	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss323245285	CHEV_10_8483481	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36484716					SNP	C	C	C	C	C	C	T	C	T	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810536	NES14204867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639447 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	664 bp downstream
Rr427376	regulatory region 427376	352 bp distal
Rr427377	regulatory region 427377	158 bp distal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1287 bp upstream
Tssr96640	transcription start site region 96640	1424 bp upstream
Tssr96641	transcription start site region 96641	1400 bp upstream
Tssr96642	transcription start site region 96642	1369 bp upstream
Tssr96643	transcription start site region 96643	1313 bp upstream
Tssr96644	transcription start site region 96644	1217 bp upstream
Tssr96645	transcription start site region 96645	1067 bp upstream