rs36481338 SNP Detail

Summary

• ID
  rs36481338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49798153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTCCCA CTGTCCATTC
  ATATGACATT ATTTTATCAG CTTATTCAAA GTGGGCTATT AATGCTCAAT GGACCCCTAC
  CCCTCAGTTT CCCTGTTTTT CCATGTCACT TGCTCCATGC CTCTGAAGGG AGAATTCATC
  TGCTTCCCCC TTAATCTTCT TTGTTTTACA AATTAGAAAC AGGAAAATCA GAGTGGCATG
  Y
  GGACTAAATA GGGCCCTAAT CCACCAATAC TGAGGGCTAA AGAAATATCT TCATAGTTAA
  TATGAAAAAA AATCTCCAAG ATGATGATGA TGGTGATGAT GGTGAGGAGT AGGAGGAGTA
  TTGGACTTTC TTTAGGAAGT ATCATATGTA GAAAATCAAG TCATTGTGTT TCTGACTGTG
  AATGAAGATT AATTTCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51521356	NES14699135	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36481338					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51521356	NES14699135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49798153 () rs orientation: forward

Symbol	Name	Function Class
Rr576114	regulatory region 576114	1174 bp distal