rs36480324 SNP Detail

Summary

• ID
  rs36480324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108815556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTATAT CAAGTCCTGT
  ATTTAATAAT TTTTCTGATT CCTTTAAATG TCACCAAGAA ATGTTTAAAG CTGTCAGGTA
  AGAGTTGGAA TTGGGTAAGG TAGCTAAGTT TATACCACGC TTGTCTTGTG GTTTGCTAGT
  AGTAGAGTTG CAGGACTTGG GAAGAGCTGG AGGTAATGTT GTATGCCTTC ATTTTATGGA
  Y
  GGCAGAAGAG GCCTGGGCCT TGGTTCTGGT GAGGCTGCTG GGTTTCCTTC TAGGCTCTAG
  TTGCAGAGCA CTTTCAGTTT CCCAGTATTT CCTTCTAAAG TGATTGCTGC TCCATTAAGT
  CTCCACCATC ACTTCTGAGA ATGTGCCCAG ACAAGTAAAT GCAGCGTAAT TAGTGCTAAC
  GCTGGAGCTG TGAGGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51808874	NES14771204	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36480324					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808874	NES14771204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108815556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368141	regulatory region 368141			986 bp upstream
Rr636220	regulatory region 636220			1723 bp distal
Rr636221	regulatory region 636221			212 bp distal
Rr636222	regulatory region 636222			724 bp proximal
Tssr58116	transcription start site region 58116			1962 bp downstream
Tssr58117	transcription start site region 58117			1943 bp downstream
Tssr58118	transcription start site region 58118			1897 bp downstream
Tssr58119	transcription start site region 58119			1856 bp downstream
Tssr58120	transcription start site region 58120			618 bp upstream