rs36478356 SNP Detail

Summary

• ID
  rs36478356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:70344090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGAAATA TGCATTCCCA
  TAAGAGTTTG GTTTGCTAGG TGTGTAAGAG AAGGGTGTAT GTGAGTGGGA TTATGCATGT
  GCCACAGTGG GGTGTGGAAG GCACAGGAAA ACTTTCAGGT GTCAGTGTTC TTTTTCCAGT
  GTGGGACTGT GCTACATGGA CAACATAATG TAGTGTGAAT AGGAAAATAA AGACCCAGAC
  R
  TGTAGAGATA ACCACATCTG TTGGTGGGCC GCAAGAAGAT CTCTGGACTC AGGCTTGCTA
  GAGCTTCCCT TGTTGATCTC TGTTGCTCCA CATTTTTAGA AGGAGCTATT GGCGCTGTCC
  CTGGTGCTGC TGGAAGAATG CACCATTCTG GACCATGTCT TATAATCCTG AGCATAAATT
  CTAAAAGCCC TAGTAAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss50980680	NES13927774	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36478356					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50980680	NES13927774	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:70344090 () rs orientation: forward

Symbol	Name	Function Class
Rr578269	regulatory region 578269	37 bp proximal