rs36472269 SNP Detail

Summary

• ID
  rs36472269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97715957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAGGCC AACTCTGAGT
  CCCACTGCAA TGACTCCATC ACCCAGCTCT TCTCACTGTC TCCACAGTTT CATTTGCTGC
  TGCCCAGCCT CGAATGAGCC TGCAGATCCA TGAGCCACGA GTCCCTCAAG GGTTAATAAG
  GCCACAGTGC CTTTCTAGAC CTCTGTACTC TGCATCTTCC TCACCTTGCT GTCCTTGCTC
  Y
  GCAGCAGAGG TCATCTGAGT CTTTTCAGAA ACTTGTGGCA CATTTATCCC CATGTCCTCA
  GGCAGGGTGC CAGGTCTGGG GAGGCAGAGT CCTCGATTTC CTACTCCTCC TTACTCTCTG
  CCTGATATGG TTGCTGAGTG AAATGGCATC GTTTTATGAC ATGCATGTAC ATTGGATATG
  CAACATTATA CATAGGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51376259	NES13728276	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36472269					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51376259	NES13728276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97715957 () rs orientation: forward

Symbol	Name	Function Class
Rr399782	regulatory region 399782	1216 bp upstream
Rr635214	regulatory region 635214	1085 bp proximal
Rr635215	regulatory region 635215	1312 bp proximal
Rr635216	regulatory region 635216	1601 bp proximal