rs36471899 SNP Detail

Summary

• ID
  rs36471899
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94277269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACTGCTA CTATTATTGG
  TATTATTATT TGATTGTTCT ACTTTCTGCT ATTTCTTCCC CTCACTTATT GTCTATCTTC
  TCCATTTCCT ACACCAAAAC AAAGCTGAGA AGAGAAAGAT AGTCTCAGAA TTTTCTTTTA
  CATAAGCTCT CATTGTGTAG CTTGGGATGG CTTCAACCCA AAAGTAGAAT GCCTGAGGTT
  W
  AAAAAATATA ATGCCATTGA GATGGCTCGG TGTGTCAAAG CCCTCGCCAT GCAAGCCTGA
  TCCTGAGTTC AAATCCTAGA ACCCACTTAA GTTTTGAAGG AGAGAATCAA CTCCAAAAAC
  CGTCCACTAC ACAGGTGTAT ACCCACACCC ACACCACCAT CACCATCATC ATCATTATCC
  ATACACAATA ATGGATTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51768571	NES14791281	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A		T	T	A	T		A
ss321867051	CHEV_6_94250282	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36471899					SNP	A	A	A	A	A	T	A	A	A	A	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51768571	NES14791281	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94277269 () rs orientation: forward

Symbol	Name	Function Class
Rr634862	regulatory region 634862	317 bp proximal