rs36470025 SNP Detail

Summary

• ID
  rs36470025
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22038448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGACTAAA GAATTTGGGT
  GACTTTCAAA AACATCCAAG CAAGGCTGGC AAGGTGATTT GTTGTACAAC AGCGCTTCCA
  ATACCCAGAG CCCACGTGGC AGAAAGAGGC AGCAGAGGTC CCTTGACCTC TGCTCAGGTG
  CTCCAGCCAA CAAGAGCCTC CCCACCCCCT GCTGTTCCAA ACACACACTG AATAAAGAAA
  K
  GTTAAGCAAA ATAAAACAAC TTTGCAGTTC TTAATGGAAG GAACAGCTTT CCTTTTTTCC
  CCATTATTAA CCTTTTTAGT TACCCTACAA AATAGTAAGT TTCATTAAGC AGTTTCTTTC
  TTAAAACACA GCAGGAGTCA TCTGAAAGAT CCTAGCAGGA GTGGAGATGT AACACATGCT
  CTTTAACTTG TTTGGTTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss51434036	NES14435641	PERLEGEN	MM_PANEL2	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs36470025					SNP	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434036	NES14435641	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22038448 () rs orientation: forward

Symbol	Name	Function Class
Rr574178	regulatory region 574178	944 bp distal
Rr574179	regulatory region 574179	within coordinates
Rr574180	regulatory region 574180	21 bp distal
Rr574181	regulatory region 574181	344 bp proximal
Rr574182	regulatory region 574182	1777 bp proximal