rs36468105 SNP Detail

Summary

• ID
  rs36468105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69767177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA TGCTTACCTC CTGCCTTAGA
  R
  TGAGCTTAGA TGCTCTGGCT TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50977790	NES13927105	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36468105					SNP	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977790	NES13927105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69767177 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13263	CpG island 13263			363 bp proximal
Rr578229	regulatory region 578229			within coordinates
Rr578230	regulatory region 578230			68 bp proximal
Rr578231	regulatory region 578231			408 bp proximal
Rr578232	regulatory region 578232			468 bp proximal
Rr578233	regulatory region 578233			1469 bp proximal
Rr578234	regulatory region 578234			1587 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B			Intron
				mRNA-UTR
Tssr903	transcription start site region 903			11 bp downstream
Tssr33557	transcription start site region 33557			970 bp upstream
Tssr33558	transcription start site region 33558			31 bp downstream
Tssr33559	transcription start site region 33559			1530 bp downstream