rs36466323 SNP Detail

Summary

• ID
  rs36466323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113696812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGATAG AGGGTTGTCC
  ATTTCAGTGT TGCTTGTCCC TTGCCCTCAG GAGCCTGATG ACAGAGCTAA TTAGGCTGAC
  CAGTGAGCTC ACTGACACTT ATGAATGACC AGTGCTGAAT AATTTAGACC CCGGTGAGCT
  TGCATGTTCA TGCATACATA TATACATATA TACATATATA TACACACATA TACAGACAGC
  W
  AAGAGAGCTT ACCTGGAATG CCTGGGGATG TGGTGCCTGC TCACCGGCTT CTCCTTATAT
  AGGAAGCCTT GTGTTTGTTC ACATCCGGTA GCCTCATCTC TTGAGGCTGT GTAGTTTGTG
  TGGGCAGTAT TGCATTCCTT GGGAACTAAG TACTCTTTTT TTCCCCTCAC TGTTGAAGAA
  CAAACAGTGG AGGACAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51839639	NES14764966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36466323					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839639	NES14764966	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113696812 () rs orientation: forward

Symbol	Name	Function Class
D6Oda23	DNA segment, Chr 6, Sen-ichi Oda 23	1735 bp distal
Ghrl	ghrelin	Intron
Gm44033	predicted gene, 44033	573 bp downstream
Rr636588	regulatory region 636588	1257 bp proximal
Tssr62470	transcription start site region 62470	383 bp upstream
Tssr62471	transcription start site region 62471	29 bp downstream