rs36465675 SNP Detail

Summary

• ID
  rs36465675
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122070388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACAATG GCCAAAAGGA
  GGCATCAGCT GAGGACCTGG AAGATGCCGC CTGTGACAGT GCACTGTTTG TAATTGACAA
  AACTCCTGGA TTGAGTGCTG ACAAAAACTT TTACCTAGAA GACAAGGCTC CGAGTGAAGT
  TGCTATTGAG GAAGAAAAAG AGGAAGAGGA GAAAGAGGAG GAAAATAGTG AAGAAGACTC
  W
  TCAGACAGTG ATGAGAATAA GGATGAGTCT AGTGACGAAG AAGACTTGCT CAGTAACACC
  AAGTCTAAGC TGTAAGTACT GCCTCGGAAA GGAAACTGGG GAGGCCATGC TGAGGCGCAC
  AGCTGTGGCC GCAGCATGGC AAGTGTGCCC TTCCCTCAGC CTCCAAAGTA ATGTTTATAG
  CATGTGTTGT AATAGTGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51020908	NES13905128	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36465675					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020908	NES13905128	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122070388 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			1871 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584274	regulatory region 584274			1718 bp distal
Tssr31492	transcription start site region 31492			1159 bp downstream