rs36464849 SNP Detail

Summary

• ID
  rs36464849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:100684416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCAAGGT GTTGGGAACA
  TTGGGGCAGC ATCCTCTTGT CTCGATCTGA ACAAATTGGC TCTGCCTTGC AGGAGATCAT
  GAATAGAATG CCAATGGGTG CTATAGAGAA GGTATATTGC CACAGGCAAC AAGATCCTGG
  AAGCCATTTT TCTTTTGAAC ATATCTCTTA GATGATCATG GGAATGATGT CCAGCGCCAC
  R
  GGAATAAAGA ATGACTTCAC AAACTCTGGA AAGAGTGAAG AAGAAAAAAA AGAAAAAAAA
  AAAGGTCATC TCAGACTCAA ATACATAAAC AGTTGACATT TTCTGGGGTG TTTTTTCTTT
  CTTTCTTTTG CTACCTCCAT AGCAAGGGTA ACTCAAGGTT TTAAATAAAA AGGGAGCAGG
  AGGGGGCAGA TTCCCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794140	NES14788292	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36464849					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794140	NES14788292	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100684416 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gxylt2	glucoside xylosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr635698	regulatory region 635698			139 bp proximal
Rr635699	regulatory region 635699			1972 bp proximal