rs36462122 SNP Detail

Summary

• ID
  rs36462122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:42561984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCATCC CCTTTCCTGA
  CATGATGCAC TTTATTTTCT GAAATCATGA ACAGAAATAG ACTTCTCCTC CTTCGAGTCA
  CTTCTGTTAG ATACTTGGTC ACAACAATGA GAGGAATAAA TGGTACTCTT TGAATCATTT
  ATCATCCTGG CCAACATTTC CATCAGACGT AAGCTATTTT ATGTTTAACT GTCCTCACAC
  R
  CTGGAACCCA GGTCATAGGA GCAAAAGAAA GACATGGACA CAGGAGCACA TATTCAGGAG
  AAGGTTCTCT GTGAGAGAGG ACGGGTGCCA CACTTCTCAA GCAGCAGGCA GGGGAGTTCT
  TGAAGAAAGG GACAATATTT TACTTGTCAG TAAAAGAAAC ACAAATCAAC AGAAGCAAAA
  GCAATACTTT ATTGATTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631380	NES14833146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36462122					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631380	NES14833146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42561984 () rs orientation: forward

Symbol	Name	Function Class
Gm38798	predicted gene, 38798	1497 bp upstream
Rr629347	regulatory region 629347	1243 bp distal
Rr629348	regulatory region 629348	1342 bp distal
Tssr56046	transcription start site region 56046	167 bp upstream
Tssr56047	transcription start site region 56047	300 bp upstream
Tssr56048	transcription start site region 56048	910 bp upstream
Tssr56049	transcription start site region 56049	960 bp upstream
Tssr60620	transcription start site region 60620	690 bp downstream
Tssr60621	transcription start site region 60621	708 bp downstream
Tssr60622	transcription start site region 60622	754 bp downstream
Tssr60623	transcription start site region 60623	810 bp downstream
Tssr60624	transcription start site region 60624	852 bp downstream
Tssr60625	transcription start site region 60625	920 bp downstream
Tssr60626	transcription start site region 60626	935 bp downstream
Tssr60627	transcription start site region 60627	951 bp downstream
Tssr60628	transcription start site region 60628	1095 bp downstream
Tssr60629	transcription start site region 60629	1150 bp downstream
Tssr60630	transcription start site region 60630	1219 bp downstream
Tssr60631	transcription start site region 60631	1263 bp downstream
Tssr60632	transcription start site region 60632	1315 bp downstream
Tssr60633	transcription start site region 60633	1341 bp downstream
Tssr60634	transcription start site region 60634	1354 bp downstream
Tssr60635	transcription start site region 60635	1420 bp downstream
Tssr60636	transcription start site region 60636	1525 bp downstream
Tssr60637	transcription start site region 60637	1781 bp downstream
Tssr60638	transcription start site region 60638	1821 bp downstream
Tssr60639	transcription start site region 60639	1872 bp downstream