rs36461996 SNP Detail

Summary

• ID
  rs36461996
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31090675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGTAAC TTGTTTCTTT
  TTAATTCAGA AAGAAGAAAA ACATACATAT AAATATGACG TTTGTTTGGA AAATTACTTC
  ATCCATGTAC TGCCCAGCTC ATAAAAACAA GCCTCCGTTC CAGCCAAAGG GGGACACTCT
  GACCTTGTTT ACTGCAGTGT TTTGAAACCG CGGCCGGCCG CGTAACTCCT GACATCACTG
  M
  CCATGCATTA GCACCCTCGC TGCTGCTGGC TGCACACACT GCCCCGCTGC CTCGCACAGC
  CCACGGGTGA ACAAACACTG CAGTGCGGCC AGGACGGTGG CCTTAGCGCT GAACCCACAA
  TGCTCACATG GGACCCATCA TGAAATGCTG TAGTCTCTGG ACATGCTTAC AGAAGAGCAA
  AGGTCTGCTA TGTCAGACTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260163	NES13793980	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36461996					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260163	NES13793980	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31090675 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	701 bp distal
Rr627886	regulatory region 627886	568 bp distal
Rr627887	regulatory region 627887	within coordinates
Rr627888	regulatory region 627888	6 bp proximal
Rr627889	regulatory region 627889	648 bp proximal
Tssr55448	transcription start site region 55448	30 bp upstream
Tssr60154	transcription start site region 60154	258 bp upstream
Tssr60155	transcription start site region 60155	1062 bp downstream
Tssr60156	transcription start site region 60156	1276 bp downstream
Tssr60157	transcription start site region 60157	1347 bp downstream