rs36460796 SNP Detail

Summary

• ID
  rs36460796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83576644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCCGGC CAGTGCGGAA
  GAGCGCAGTG GGCACAAAGT GCTGTTTGTA TTGAGTCGTC CTAGGATCTT AGAGATCTGC
  AATCCTCGAG TTGCTATTTA GATGTACACA GTGTGAGGGA TCTGGTCTGA GCTGTAGACA
  TCCTGCCCTC AGTTACCAGC TGAGGATATC CTGAAACTTC AGAGCTGTGG AGGCTGAGGG
  R
  TCATTTGAAA GTTTTCCCTG CCTGGGTCAA TGGTTAGTTT TACAACTTTG CCCAAGGGTG
  TTGACGAATC CCTTACTCCT TTCCACTGTC TGCTCCCCAC TCCAGATTGC AAGTCTGTCC
  TTTATCTCCA TAACTAAGGA ATAGCTGAAG CCAGGTGTGA CCAGACCCAC TTTTCCCCTT
  CTTAGCATTC ATCAAATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51353383	NES13744268	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36460796					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353383	NES13744268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83576644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	381 bp distal
Gm7424	predicted gene 7424	1145 bp downstream
Rr632898	regulatory region 632898	1259 bp distal
Rr632899	regulatory region 632899	74 bp distal
Rr632900	regulatory region 632900	800 bp distal
Rr632901	regulatory region 632901	78 bp proximal