rs36459348 SNP Detail

Summary

• ID
  rs36459348
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85827539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGCCTT AATGCTGACT
  AAGGAGACAT CAGTGGAAAC AGTGTGCCTT ATGGCCTGTC CATTATGACA CAGGCCAGAA
  GGAAATCTGC ACTAACCTTG AGGTACATTT AGGCCAGAAA AGACAAGAAC CAGCACCATT
  CGGACAGTGA TGAACAGGAG GACGGCCTCA GAGGTGCATA GAGGGCTGCA GCAGAACATA
  M
  GAGCTCATGT AGGGAGAGGC CAGTTTTGGA AAGCTCAGGG ATGTTACCCG CAGATTCTTC
  ATGGCAAACC AGAGGCTGGA ACCCAGGTCC TGGTAGAGGC TGTGGCGACT CTGGTTATCT
  TCAAGCTAGG GATCCAGGTT AACCATTCTC ATGATGCTCA AGAGAAAATG GGCTCTGTGC
  ACCAGCTTCC TAGGATCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51759178	NES14803620	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36459348					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51759178	NES14803620	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85827539 () rs orientation: forward

Symbol	Name	Function Class
Gm67358	predicted gene, 67358	within coordinates
Gm68507	predicted gene, 68507	within coordinates
Rr379705	regulatory region 379705	381 bp downstream
Rr633276	regulatory region 633276	1065 bp distal
Rr633277	regulatory region 633277	555 bp proximal