ATGAGGAACA CAAGGATGGG TTGCTGGCCC TGGGCCTGGG CAACTGTGGA AATGTCTAGT AGGCTACCTA AAACGGAAGC CTCACTCTTG TGCGGGTTTC R GTTTATACGT CCATGGAGAT GGACTTTCAT GACTCTGTTA GTCATTACCA CTTGCCCTTC CACTGTCTAA ACCCGAGATT TTGGAAGTGC GTGATTTGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50501562 | NES13695677 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | G | A | A | A | A | A | |||
ss147551832 | ENSMUSSNP764497 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | A | |||||||||||||
ss325701887 | CHEV_18_77742306 | CHEVERUD | SCREENING_POP | f | SNP | A | A | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs36457789 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50501562 | NES13695677 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr18:77591263 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ark2c | arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi10275 | CpG island 10275 | 1021 bp distal | ||||||
Rr541132 | regulatory region 541132 | 967 bp distal | ||||||
Rr541133 | regulatory region 541133 | 1372 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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