rs36455477 SNP Detail

Summary

• ID
  rs36455477
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90454552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGATGCC CTTGTTACTG
  AGGCAAGCGA GATGCTAGTC CAGACCTGCA AGAGAGACTA AAGCAGAAGT GGAGAGCCGA
  GGAGCTCTGA AGCCTCAAGA AGCCGGGCCC CAGCCTGAAA GCTCTTGACA GGAACAGGAT
  TACCACGGCT TCCCATGGCA GGGCTGAGGC ACATTAAAGC CCAGGGCAAC AGAGCCTTCA
  W
  CTTGGGCACC TGGAGCCCCG AGTCTTTGGC TTCTATACCT CCCCAACTTG CTTTGTAACT
  CAAACTGGCT TCAAACTTGC CACCCCCACC TGCCTCCGTC TCCCAGGGAG CTCTCACCTT
  CCCAGGAATC TTATCTGTGA GGCACTGACT GAGTTTGGCT CCCACTGCCT GGCACACGCG
  ATTTAGGGGC ATCCCTGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51362815	NES13737469	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36455477					SNP	A	A	A	A	A	T	A	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362815	NES13737469	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90454552 () rs orientation: forward

Symbol	Name	Function Class
Gm44421	predicted gene, 44421	896 bp upstream
Gm66826	predicted gene, 66826	within coordinates
Rr634216	regulatory region 634216	1354 bp distal
Rr634217	regulatory region 634217	43 bp distal