rs36451088 SNP Detail

Summary

• ID
  rs36451088
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131519001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGTAGT TTTTCAGTTG
  TTTTCTTCCA TAGTCACACG TAAGATGTGA CAAAATCTGA AGCCTTCACT CTGCTATTTC
  AGGGACCTCT AAATTTTTCC TCAATTTAAC CAGCAGATGG AGCCTGGAAA CCTGCTATGT
  TAACCACTCA GGTTCTCCGG AGCGCTTCGC TTACCTTGCA GTCTTAAGGA CCTGGAAGAG
  K
  CCTCCACATT AACTTTTTGT CCGATGGACC TAAAAGCCAC GGTTGGGGGC AGCACCAAAA
  TTCACATCTT TGGCCTTATT ACCTCACCTC TTGTCCACTT GCAGAAACTG AAATCACTGT
  GTGTTGCCTC CCAAGAACAT TAATCTCAGT TCATTTCAGT TACTCACTTG GTTATTGTTG
  TGTGGGGTGG GACCATGACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51638636	NES14653909	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36451088					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638636	NES14653909	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131519001 () rs orientation: forward

Symbol	Name	Function Class
Rr585383	regulatory region 585383	within coordinates
Rr585384	regulatory region 585384	74 bp distal