rs36449438 SNP Detail

Summary

• ID
  rs36449438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:45386237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTATCT AGCTCCAGTA
  ACTATTTAGA GAATTCTTTT TAAGGTTATG TTTCCACATG AAGAGTCAGT TTTTAAAAAA
  TAGCATAAAA TAGCATTATT TTCTTTTATT ACATTGGTTT ATTTGCCATT TTGTTTTAAT
  TTGATTAGGA CCTGAATTAG TGCCTAAATA GTATCAGGAA ACTAGCAAGC TTCAGCACTG
  S
  AGGTCAATTT AATTACACTG TGCATGACAG AAACTAGGCC ATGTGGGTAT TGCCTTTGCC
  ACCAGCAATT GACACCTGCG TGTTAATGAG CTGGTAATTA AGAATTGGCA CATGCAGACA
  CAGTTTACTG TTTGGGACTA GGATAACCAT ATGCTGCTCA AGTTTTCTGC TAAGCACTTT
  GTTAGGTTTA GAATCACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51513061	NES14696150	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36449438					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51513061	NES14696150	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45386237 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027H10Rik	RIKEN cDNA 1700027H10 gene			within coordinates
Pcdh10	protocadherin 10			Intron
				Noncoding-Transcript-Variant
Rr576058	regulatory region 576058			within coordinates
Tssr29010	transcription start site region 29010			1045 bp upstream