rs36449371 SNP Detail

Summary

• ID
  rs36449371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135593553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAATACAA AGTAACATGA
  ATTAGGAAAG GATGAAAGGC TTGCTAGCCC AGCAAGGCTT GGGCTCAGGG CTTGGTCCCT
  GAGTTATAAG CTTGAACACA CCCTGCAGAA GACCAGAATT GCTTTGCTAT GATTTATGCT
  GTGGTTCCAG CCAACAGAAA TGCCTGAGGA GTATGCGAGA CTGGTTAGAA CTCAGTCTTG
  Y
  CATGCTCTGG GATTGCTTTG TCATGGTGGA GAATATGTTG GGTGGGAGAG AGAAATTGAA
  TGTAATTGTG AGCAATTTAC TTTTTAAAAG ATGAGCATAA TTATTTAGCA GGGGGAATTT
  CAATAAATGC AAAAATCACA GCTGGGCTGG GCTGTGTCAG AGACTGATGG TGGAGGAGGC
  ATGTGCTCAT TAGGGGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51646580	NES14650949	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36449371					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51646580	NES14650949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135593553 () rs orientation: forward

Symbol	Name	Function Class
Rr585796	regulatory region 585796	within coordinates
Rr585797	regulatory region 585797	1010 bp distal
Slc39a8	solute carrier family 39 (metal ion transporter), member 8	mRNA-UTR
Tssr31861	transcription start site region 31861	699 bp downstream
Tssr31862	transcription start site region 31862	581 bp downstream