rs36448168 SNP Detail

Summary

• ID
  rs36448168
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66577222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGATTACA GTGAATGAAA
  TGATAGTGAT AGTGATGCAG AAATCAACAA ATGGTTCCGG AAAGCAGGAT GGAGAGTTTT
  GAACAGATCC ACAATTCCTA AGGATCCGCG TGAGTGAGTG AGCAGTATTT AATGAAGTGC
  AAAGGGAATG TGCAGGCTGG GGTGCTGCTT ATTCGTTTTT ACTTAAGAAT TTGAAGGTAT
  W
  GAAACGAGTT TTTAAAGTCT TGAAACAGAA GAAGGCTTCC AAAGCAAGAC AGAAAAGATT
  TACAAACCAT AAAACGTTAT TAGAAATGAT CGAATCTCTC TACATAAAAA AGATGTATAA
  TTAAAGGATA CTCAAGATTC ATAAAAGACG GCTGCACGGG TGACCGCGTG GAATACAGAG
  TGCCAGCTGT TTCTGGGACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50967440	NES13939395	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36448168					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50967440	NES13939395	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66577222 () rs orientation: forward

Symbol	Name	Function Class
Gm54200	predicted gene, 54200	within coordinates
Gm65106	predicted gene, 65106	within coordinates
Rr577861	regulatory region 577861	462 bp proximal