rs36446840 SNP Detail

Summary

• ID
  rs36446840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:98083414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACCACAA AAGAGGTCAC
  CGGTCTTTCC TTTAATTTCT GTCACAGGCT GCAGGCCGTA TTATGCTAAA TCAAGGAAAC
  GAGATAATTA ACACAGCAAC TCTGGCAAGT TTAATAGGTG AGTGATGAAC ACTTAGAGTT
  GAGCTTCAAA ACCCATGTCT TAATTACCAC ACACCCCAGT GCCGTGAGGA GACTGGGGCC
  R
  GAAGCACGTG CCGCAGGTAT CCTGGGCCAG GCAGAAGTTG CCACGAGTTT CCTGTGAAAC
  TGTGATTAGA TTGAGACGTG CCAAGGTGAG GTAAAAGTTT ATTTTCTTTT CAGTTTTTAT
  TTCGTGCTTA TAATGTGGGG AGTTGCAGGT GAACTTGTAT ATGAGGATGC ACGCATGTGT
  AAGGGTGCTG GTGGATGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
ss51380869	NES13737579	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	A		A	A
ss133423437	ENSMUSSNP6643307	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
rs36446840					SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380869	NES13737579	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98083414 () rs orientation: forward

Symbol	Name	Function Class
Rr635261	regulatory region 635261	1808 bp distal
Rr635262	regulatory region 635262	473 bp distal
Rr635263	regulatory region 635263	1020 bp distal
Rr635264	regulatory region 635264	807 bp proximal