rs36446272 SNP Detail

Summary

• ID
  rs36446272
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86762181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCACAG AGCAAGCGTT
  CTACCCACTG AGCCATCCGT TTACAGTTCC TTAATTCGCT ATAGGAAACT CAAACTTGCA
  AGTGCAGCTC ATGGCACAAC TCTAGATGTG GCTCTCTGTT CTGTTTTCCA TGACTGACAT
  GAGCAGGGTC GACTGAAAGG CCATTACATT CAGACCTTGT TCTCCAGCCT GCGGAAGCAC
  S
  GTCAGTAGCC TTGTAATCCT CACCAAAGGA TCTGTGTATT TTTCTAGTGC CTTCATTCTG
  CCACTCACTG TTAGAAGTGG GGGAGGGAGA GGCAGAGAGA GAGGGAGGGA GGGAGGGAGG
  GAGGGAGGGA GGGAGGGAGG GAGGGAGGGA GGGAAAAGAT GGGGAGGAGA GAGAGAGAGG
  GAGGAACAGA GGGAGGGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51749614	NES14800014	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36446272					SNP	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749614	NES14800014	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86762181 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633512	regulatory region 633512	62 bp distal
Tssr57506	transcription start site region 57506	117 bp downstream
Tssr57507	transcription start site region 57507	288 bp upstream
Tssr61859	transcription start site region 61859	1662 bp upstream
Tssr61860	transcription start site region 61860	320 bp downstream
Tssr61861	transcription start site region 61861	348 bp downstream