rs36444115 SNP Detail

Summary

• ID
  rs36444115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78875235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACATGCTA AAAAATAAAA
  CAAGATTTTT TCCCACTGTA CTAACTCCTA TGCATACTAG TTAGTGACAA ACTAAATACG
  ACAGACATTG GTTACTTTTG AAGGCGTCAG AGTTGAAGTC TCCAGTTGTA AGAATAATGA
  CACTTAAACT TTTGAATTCT AATCCTTTTC ATACTCACGT ATGAAGGCAG AATTTCCAAA
  Y
  AATGTTGTAG GCCTGACATG CATTATAATG TATGATGTTT TACAAATAAA TTCCAGTCTA
  AAACTACTGA AATACCAGGA GAAGAACTAG ATCTTAGCTT CTTCTAACAA TGTGTCATAC
  TACAAAGTGA ATTTCAAATG GTTAGTCATT CAAAAGGGGG TGGTAAAAAG TGAAATATCA
  AATAAGAAGT CACCTAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51711181	NES14810564	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36444115					SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51711181	NES14810564	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78875235 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	1800 bp proximal
Rr632521	regulatory region 632521	1883 bp proximal