rs36440584 SNP Detail

Summary

• ID
  rs36440584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82927797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACTGCAC CTATGATTGG
  ATTGCTGTAG AATGCCATGG ACCCACCCAC CCATCGGAGC CATCAGGACA GCCTTCTCGG
  AAGGCTGCTG GCACAGGGTG AAAGTAGCTC ACCTAAGTTT CATTGGGAAA CACCAAAGGA
  AGAGGGCGAG TTAAGTTTAG GCTTATGGCA CTCACTCAAA TCTAATTGGG TCACAGTTGT
  R
  TCTCTCATAG CTAGACACCA GGTCTATGGC ACTGGCTCCT ACCCAGCAGG TCAACACTAG
  ATTTTCTCTT CCTGGCAAGT GGAGGGGACT CCTCATCAGT CTGGTTGTTG ACTCTCCTTA
  AATAAACATG GCAGGGCAGA TTCCACTCTG GGAATGATCA GGACACATAG TTAAACTGTT
  ACAAGAAAAA AAGAAGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990184	NES13925911	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36440584					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990184	NES13925911	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82927797 () rs orientation: forward

Symbol	Name	Function Class
Rr578819	regulatory region 578819	within coordinates