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rs36439269 SNP Detail
Summary
  • ID
    rs36439269
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:15189184 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTTTACATC CACTCACCTT
    CTTCTAAAGA AGTTGTAGTG ACTCTTGTTA GTATTATAAA GACCTCCTTC TCAGACATTT
    TAATCTTTAG AAGTCATAGG AGGAAGAGGG GAAAGGGCTT GTAGAACAGA CATCATGAAG
    GCTAATTACA GCAGGAGAGA AACAAAGCTG GTGTCGTGTT TGGAAGAACT TTCTGGTGAC
    R
    ACTGAAGCTG TAGATTTAAA GAAAACACTG CACCGAAAGG CAAATGTTTT TTTTTTTCCT
    TGTCTTTCAA TTTTTATGAG AACCTGTCGA TCACAAAGGA TTCCAGCATT ATGTCTTGCT
    TTTAATGTTT AGTTAAACTG AGGCAAATGT TTTAAGAGTT AAGAACTGTA TGCATATTTC
    CATATACCTA GGTGCCTCCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss51242605 NES13801227 PERLEGEN MM_PANEL2 f SNP A A A G A G G A A A G A A G
ss321751560 CHEV_6_15139185 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs36439269 SNP A A A G A G G A A A G G A A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51242605 NES13801227 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:15189184 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Foxp2 forkhead box P2 Intron
Noncoding-Transcript-Variant
Rr406279 regulatory region 406279 67 bp distal
Rr626650 regulatory region 626650 1815 bp distal
Rr626651 regulatory region 626651 851 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory