rs36436680 SNP Detail

Summary

• ID
  rs36436680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83449217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCTTTT GCATTTTAAA
  CAAGGCTTCA AATAAGTATT CTTATCTAAA TCATGTCCTT GGGAGAGTGT CTTACCGTAG
  CTTAAGATGT GTCAGGAATT CCTCTTTTGA GATTGCTTTT GTCTAAGTTA CATTTTGCTG
  AATATTCCCA ATCAGTCGTT CTTATTCTCT ATGCTTTGAA GGAGAGCTTA ATTTTAGAAA
  Y
  CCTTCAAACA TAATTTTGAG AGACATATGA GAAGGTATAG TCAAGTGTAA GTAAGACATT
  TATTTTTTAA GTAAAAATGT TACTTGTGAC ATTCATGTGT CCTGCTACCC ATCAGACTCA
  GGTGCTCGGC ACACAACCAC TTGACATGTC TTTATTGAAC GGGAAACACA ACCAGACTCG
  ACAGGGACCC ACAGCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354911	NES13746956	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36436680					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354911	NES13746956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83449217 () rs orientation: forward

Symbol	Name	Function Class
D6Mit128	DNA segment, Chr 6, Massachusetts Institute of Technology 128	913 bp distal
D6Mit1006	DNA segment, Chr 6, Massachusetts Institute of Technology 1006	875 bp distal
Rr632872	regulatory region 632872	153 bp distal
Rr632873	regulatory region 632873	941 bp proximal