rs36435876 SNP Detail

Summary

• ID
  rs36435876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86849199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGTGAC TTCCTGTGCT
  GAGGAGTGTA AGAGGTGAAC TCCTGTCCTG AGGTGTGGAG GGGTGTGAGA GGTGATCCCC
  TTTTCTGAGA TGCTGAGGGG TGTCTAAGGG TGTTTACTAT AGATCCTGTG AGCTGGTGCA
  TGGGCAGACC TGAAGATACG GATGGTTCAG TTTTTGGCTA ATTACAGACC TCAATTGTTT
  W
  TAGTGTTATG TAGATATCAT TTGTGGTATT TATTTGATAA CTTCATGTTT ATTAGAAGCA
  ATTAGTTTTT TTATTTTATA CTTGTATAAT TTATGTTAAC TATCAGGGTT TTGTTGTTGT
  TATTGTTGTT TTGTTTTGTT ATGGAGACAG GGTTTCTCTG TGTAGCCCTG ACTGTCTTGG
  AACTCACTCT GTAGACCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51748750	NES14798549	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36435876					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51748750	NES14798549	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86849199 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Gm44152	predicted gene, 44152			1569 bp upstream
Rr633547	regulatory region 633547			1449 bp distal
Rr633548	regulatory region 633548			86 bp distal
Tssr57515	transcription start site region 57515			1404 bp downstream