rs36434850 SNP Detail

Summary

• ID
  rs36434850
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78876002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTTTAA AAGGTCTAAC
  TGAATAGCGT TAAGTAAAAT CTTGGTATTT CTGATATGAA TATTTTCTCT GGAGTTGGTG
  GATTCTGAAA TTTAAAAAAA ATAGTCTGAG CTAGTCAAGC TGTCATATAT GTTCTGAATC
  ATAATTGAAT CGGTTTGGGA TATCTTTTTA ATTAGCTTAA TGCAGACAGG ATTATCTTGG
  W
  TTGGAAAGCT TTTGGCAGAA GTACTTTTAA ACAATTAACT TAACCAAAAC ATAATGAAAA
  TGTTAACAGA ATATAGCAAA ATACTAGCAT ACATTTCCTG TACTCCATTA AAAAATACAT
  ACAGTGTTTT TCATTCATAT TTTATGACTA AAATTTTAGT GATGGAACTC ATACGATGAA
  ATAGTGTTGA AAATCACTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51711169	NES14810569	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A		A	T	A	A		T
ss321832861	CHEV_6_78849013	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36434850					SNP	T	T	T	T	T	T	T	T	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51711169	NES14810569	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78876002 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	1033 bp proximal
Rr632521	regulatory region 632521	1116 bp proximal