rs36434630 SNP Detail

Summary

• ID
  rs36434630
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:100687748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCATTCC TGTGGTGAGA
  TGAAAGGTGA AGGCAGAGTT GCCCAGAATC TAATAGAGGA CTAGCTAACC TGCAGTGCAT
  CAGAAACAAC AAGAAAGACC CTGACTCAGC AAGGTGGAAA ACCTCCAAAG TTGTCCTCTG
  ACCCCCACAC ATGTGCATGT CCCCATACAA ATAAGTAAAC AAACAAACAA ACTTTGAGTT
  K
  AACTTCTCTC TGTGGTCATT GGCCCCTTCT CTCTATCAAC TCATCCTCTG CCCTCATCTC
  TTTCTATCCT CCCTTCCATC ACTGGGCCTC CTTCCCCATT TGCATCCTCA TGCAGCAGGG
  TCCTCATCTC TTTTGGGTCT ATGTCCCAAT GTCTTATTCG CAAAGCCACC TCCCAAGCTG
  TGCAGATGTG CAGAGTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51794101	NES14788255	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36434630					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794101	NES14788255	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100687748 () rs orientation: forward

Symbol	Name	Function Class
Gxylt2	glucoside xylosyltransferase 2	Intron
Rr635699	regulatory region 635699	850 bp distal
Rr635700	regulatory region 635700	355 bp distal
Rr635701	regulatory region 635701	432 bp distal