rs36434560 SNP Detail

Summary

• ID
  rs36434560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117865170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATCTTCT AATAAACATT
  CTAATAAATC TTTCACATAG ATACACATAC ATACAAATAG ATTATATATA TATATGTAAT
  AGATTTATAT ATCTATACAA ATTTGTGTCT ATGTATATAT GTAGTATTAG ATATAGATTC
  ATTCTATAAG TTCTGTTCCT CTATAGTACC TTGACTAATC ACTTCCTTTA CTTGACCTCA
  Y
  TGACCACTAA TGTCCCTCTT TGTCCCATTG CCTGCTTCTC TTTTCCCAGA CTTCCTTCCC
  TTTTAGTTTC CTGCCCTTTT AGTTTCAGAC ACTGTGGCTC AAAGTTTCTC TTCTCCTTCT
  CTACCTATAT TTGTCTTTCT TGTGAAACTT GGTTTTTACA TTGGTTTTCC AGAAACATGT
  TTCAGGAAAT ATTAAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51597170	NES14669672	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36434560					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51597170	NES14669672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117865170 () rs orientation: forward

Symbol	Name	Function Class
Gm65635	predicted gene, 65635	within coordinates
Rr583881	regulatory region 583881	1090 bp distal
Rr583882	regulatory region 583882	887 bp distal