rs36432290 SNP Detail

Summary

• ID
  rs36432290
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT GGCTCCTCAT TCAGTACCAC
  M
  GCAGCACGGA TGCTGCTCTC TGCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51576152	NES14670762	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C		A	C	C	A		C
ss135467990	ENSMUSSNP18711	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss320835328	CHEV_3_87552910	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36432290					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576152	NES14670762	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656295 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	363 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	156 bp distal
Rr579536	regulatory region 579536	6 bp proximal
Rr579537	regulatory region 579537	214 bp proximal
Tssr33946	transcription start site region 33946	433 bp upstream
Tssr33947	transcription start site region 33947	420 bp upstream
Tssr33948	transcription start site region 33948	390 bp upstream
Tssr33949	transcription start site region 33949	373 bp upstream
Tssr33950	transcription start site region 33950	358 bp upstream