rs36431664 SNP Detail

Summary

• ID
  rs36431664
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127741680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCTAGA CTCCCAAGCA
  TTGCAGTCAC ATAATTCATA CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTAATCAGAA TTGGATCCGA AGAAAGCTGG
  TGGCAGCTCT CCTCTCCCAT CTGTCCTCTC TGAGATGTAA GAATGGGAGC TCTCCTTACC
  K
  CAGGCCAGTT CTTCCTTTCT ACCTGGCTAC ACCGGTGCCC TGGCATGCGT CTGCTCTGCT
  GCCCTCTGCT TTAAGTTTCT GAGTAAAGAT TTTCAGAAAC AAAGGACTCT GCATCAGCCT
  TATCCACCAA CCAATGAATC AGGTAAGAAG TATTACTTTT CTTACACTTC TCTGATAGAA
  AGCAAACTTT CCTTTTATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616838	NES14661526	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36431664					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616838	NES14661526	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127741680 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	990 bp upstream
Rr584909	regulatory region 584909	403 bp proximal
Rr584910	regulatory region 584910	842 bp proximal
Rr584911	regulatory region 584911	1069 bp proximal