rs36427107 SNP Detail

Summary

• ID
  rs36427107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72595504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTCAGT GCTTAAGAAC
  ACTGACTACT CTTCCGGAGG ACCCACATTC CATTCCTGGA GCCCACAAGC CACCCGACAA
  CGGTCTATAA TTCCAGTTTC AGGAGACCTG ACATCGTCTT TTGGCCCACA GTCACTGCAC
  ACATGAGGTG TAGAGACATA CATGTCAGTA AAACATACAC CCACTTTAAA TGTGCTTGCT
  Y
  TCTGCTCATC TGCAGATTCC TGTTTGCAGT CATTTCCTGT GTCCTCATCT ATGGTAGTGC
  TGGATGGTTT AAACAAGTTG TCTAAAGTCA TTTATGAACA TTTGCCAGGC TAGGTATCTC
  ATAAACAGTG ATTTAACAAG TAGCCTCAAC ATCTATGTTC ATTTTTTTTT CTTTGTCATT
  TTCGAGACAG GCTCTCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss51695103	NES14819624	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs36427107					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695103	NES14819624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72595504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	1326 bp distal
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	1578 bp downstream
Rr632244	regulatory region 632244	1694 bp distal
Rr632245	regulatory region 632245	1764 bp distal
Rr632246	regulatory region 632246	1532 bp distal
Rr632247	regulatory region 632247	1031 bp distal
Rr632248	regulatory region 632248	882 bp proximal
Tgoln1	trans-golgi network protein	1521 bp upstream
Tssr57152	transcription start site region 57152	1603 bp downstream
Tssr61478	transcription start site region 61478	1765 bp upstream