rs36425530 SNP Detail

Summary

• ID
  rs36425530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65533064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTACTCCA ATTTTTCTGC
  CCGAGTTTTG TGATTTTTCT TTTGACAGTG TTTACTGGCA ACCAGCAGAG CCCTCTGAGC
  ATGAATGCTA TCTCTTCTGT CTTTAGGTTT TTTTTTTTTT TTTTATGGAG TTAAAAGTTC
  TGGTTTGTAA TACTTACCAT TGTCTACAAG TGCAGGATCT ACTACTACTT ATGCAAATGA
  R
  CTGATCTGTG AGTTCTCTTC AGGGGACTTT TTTCAGTATG AATCGAAAGA CTCTGCTATG
  TGGTCTGCCA TGTCCCTTCT TCTAGCACTT GAGTTCATCC TTCTGTGAAC ACCATTGTTT
  GCCAGATCAT CTTATCCTTA AGTACGTTTG GAGCACATAA CAATCTTTCC AGTTCTTGAT
  AAATGAGATA ATGTTCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50965488	NES13945893	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36425530					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965488	NES13945893	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65533064 () rs orientation: forward

Symbol	Name	Function Class
Rr577712	regulatory region 577712	227 bp proximal
Rr577713	regulatory region 577713	1420 bp proximal