rs36422202 SNP Detail

Summary

• ID
  rs36422202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86759883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTACTGA GCAACTGATG
  CTGTGGCTAC AGTTACAGAG AAACTCGGGG TTTTTATCTT ATGTGCATTG ATGTGAGGGT
  GTCAGATCCC CTGGAACTGG AATTATAGGC GGCTGTGAGC TGCCATGTAG GTGCTGGGAA
  TTGAACTCAG GTCCTCTGGA AGAGCAGCCA GAACTCTTAA CTTCTGAGCC ATCTCTCCAG
  Y
  CTGTTCATTC TGATTGACTT CACTCTTTAA AATGCCTTAG TTTCCCCAAA TTCATTAACT
  TTGGATTTTA AAATGCACTA ACTTCCTGCT CCTGCAGGAC CGAAGTCACC TTGAGTACTG
  TGTACAATAC ACCTGCCAGG CAGGATGCTC CCTTTCTAGT GTTCCGTGAG CAACTAATTG
  GTACCAGCAG CTTTGCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51749653	NES14800086	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36422202					SNP	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749653	NES14800086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86759883 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633511	regulatory region 633511	172 bp distal
Rr633512	regulatory region 633512	1885 bp proximal
Tssr61857	transcription start site region 61857	1937 bp upstream
Tssr61858	transcription start site region 61858	1873 bp upstream
Tssr61859	transcription start site region 61859	621 bp downstream