rs36422082 SNP Detail

Summary

• ID
  rs36422082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113696463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGACAG ACTGACTGAC
  CTGGGCTTTC TGGTGCTCTG GGCTCAGGAA GCTGGAGCCT GCCATGGCCA TGTCCATCCA
  GAGCATGCTG AGTAGCAGCA AACTGCAGAT GGTGCCTGAA GACAGCATGG TCTTGGTGGT
  GAGGACAGAT GACCTGGGGG AGAGAGGGTC TTCTGGTAGC CTACTTCATC TCCATGTTAT
  R
  TGCCTTAGAA TTTGCTCAGG CTAGAATCCA GCAAGCTTCT AGAAGTAAGG ACTGCTGGAC
  GAAGCAAGGC TCTCTTGTCA CCATCTTTCA AGGGTGGGAG CTGAAGGCTG ACCTCTGCTT
  TTTCAATCTT TGGAGGCAGA CAGAGCCTGA TGTGATAGAG GGTTGTCCAT TTCAGTGTTG
  CTTGTCCCTT GCCCTCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51839641	NES14764998	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36422082					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839641	NES14764998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113696463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Oda23	DNA segment, Chr 6, Sen-ichi Oda 23			1386 bp distal
Ghrl	ghrelin			Intron
				mRNA-UTR
Gm44033	predicted gene, 44033			224 bp downstream
Rr636588	regulatory region 636588			1606 bp proximal
Tssr62469	transcription start site region 62469			1789 bp upstream
Tssr62470	transcription start site region 62470			34 bp upstream
Tssr62471	transcription start site region 62471			378 bp downstream