rs36418616 SNP Detail

Summary

• ID
  rs36418616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86784504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA GCTGTGCTCA CCTGGTGACC
  Y
  GGTATTTGCA GATGGATGCT TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss51749212	NES14799572	PERLEGEN	MM_PANEL2	f	SNP			C	C		C		T		C
ss133359555	ENSMUSSNP680656	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss321847364	CHEV_6_86757516	CHEVERUD	SCREENING_POP	f	SNP							C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs36418616					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749212	NES14799572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86784504 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr21	DNA Segment, Chr 6, Derry C. Roopenian 21	596 bp distal
D6Mit29	DNA segment, Chr 6, Massachusetts Institute of Technology 29	595 bp distal
Rr633520	regulatory region 633520	599 bp distal
Rr633521	regulatory region 633521	888 bp distal
Rr633522	regulatory region 633522	719 bp proximal