rs36416875 SNP Detail

Summary

• ID
  rs36416875
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119656313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACTTAA GCTATCAGCA
  CAAGTCCCTC ACTGTTTCTT TCCTTCTTCC TTTTTCCTTC TCTTCTTCCC CCAATGCCAC
  ACCCCCCACT TTCTATACAC TAGCCAATGT ACATCACTTA AAAACTGAAC TTATCAGAAA
  CTTGCTCCCT CCAGCGCAGA CTCTTTCCAG CTACAACAAT TGTTTTTTGC TTCTGGATAA
  M
  GTTTTGGAGG GCAGCTGGCA CGTTCTACTC CACACAATGC AGTGATACAT AAGCAGGATA
  AGAAGACCGA GAGCCGCCCC ATAGAGTAGA CTCTTGTGTG GTCCACTGCT CAGTTCTGCA
  TATACTCATT GTGGGCACTC ATCTATCTGT TCTTCCATTC AACAGTTACA GTGGCTTTCA
  TAGACCATGG CAGTGTGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51015272	NES13913526	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36416875					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51015272	NES13913526	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119656313 () rs orientation: forward

Symbol	Name	Function Class
Rr583946	regulatory region 583946	151 bp distal