rs36416002 SNP Detail

Summary

• ID
  rs36416002
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69767654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGCCTGT TCGCACTTCT TCAGAGATTA GCCTCTCAAG
  AGAGGGCGCC TTCTGCCTTA CTGGGGGGAG CAGGGGTTCT GAGAGCTACG GAGGAGATCG
  W
  GGTGGCGCTG TCACCTCACC TCCGATTGCT GCAGTAAAAC CGGGAGCCTA GGCAGAGATA
  GGAGGGGGGA TGGGTGTTGC CCTCCCCCTC GCTTCAGCGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50977786	NES13927107	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36416002					SNP	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977786	NES13927107	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69767654 () rs orientation: forward

Symbol	Name	Function Class
Rr578229	regulatory region 578229	410 bp distal
Rr578230	regulatory region 578230	within coordinates
Rr578231	regulatory region 578231	37 bp distal
Rr578232	regulatory region 578232	within coordinates
Rr578233	regulatory region 578233	992 bp proximal
Rr578234	regulatory region 578234	1110 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	457 bp upstream
Tssr33557	transcription start site region 33557	1447 bp upstream
Tssr33558	transcription start site region 33558	420 bp upstream
Tssr33559	transcription start site region 33559	1053 bp downstream