rs36413253 SNP Detail

Summary

• ID
  rs36413253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113357206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGAGAG AAGCCTTGCC
  CGAGATAATG TAGCTGGTCA TTGTAGCTGA CCTTGTCCAC TGAGAATGGA CAGCTTTTAC
  TTTTTCTCAT TGTAGAACCG TCCTGATCCT GTATCTGGTC AAAACCAGTT TCTTTAGACA
  GTCTAGATTA TTTTTAAGAC TAGCTAGTTT TATATGTTGC CCTCTGTTAG CCCTTGTGAT
  Y
  CTCGCCCAGT TGAGCTGTTT GAGGGTAGAA GAGAGATCAC TTCTGAATTC CCAGCAAGTT
  CAGGACATGG ATTGATACAC TTGTCAGTGC AGTCAGCAGA TAGGGATATG GCTCCTTCTA
  GATCATCAGC CTTACCTAGC TCTGGCACTG GTGATGCTGT GTAATTCTGT TGTGCATGCC
  AGGATATTGC AGCATGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841923	NES14761529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36413253					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841923	NES14761529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113357206 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	Intron
Cpgi17841	CpG island 17841	1421 bp distal
Rr636499	regulatory region 636499	1665 bp distal
Rr636500	regulatory region 636500	1339 bp distal
Rr636501	regulatory region 636501	657 bp distal
Rr636502	regulatory region 636502	1489 bp proximal
Tssr58200	transcription start site region 58200	468 bp upstream