rs36412302 SNP Detail

Summary

• ID
  rs36412302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97875540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGAGTCA CTTCTGTCAT GGTCCTTCAC CAGAACTTTC
  TAGGTCTAAC CCCGCTTTGC ACTACGGTAC AATGGGGTGT GTCTTCCTGG CTGCTGAAGG
  Y
  GGACATATTG GTGGGCTGGC TCTCTCCTCT CTGGGGGAGG GGTCCTGCCC TCCAGGCTCA
  CCGCTCTTCC ACTCGGGGTG GCAGAGTTTC AGGTCTTGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763539	NES14551347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36412302					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763539	NES14551347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97875540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr509000	regulatory region 509000			827 bp distal
Tssr4707	transcription start site region 4707			764 bp upstream
Tssr4708	transcription start site region 4708			1553 bp upstream
Tssr136189	transcription start site region 136189			1972 bp upstream
Tssr136190	transcription start site region 136190			1942 bp upstream
Tssr136191	transcription start site region 136191			1738 bp upstream
Tssr136192	transcription start site region 136192			1608 bp upstream
Tssr136193	transcription start site region 136193			1591 bp upstream
Tssr136194	transcription start site region 136194			1540 bp upstream
Tssr136195	transcription start site region 136195			1517 bp upstream
Tssr136196	transcription start site region 136196			1505 bp upstream
Tssr136197	transcription start site region 136197			1487 bp upstream
Tssr136198	transcription start site region 136198			963 bp upstream
Tssr136199	transcription start site region 136199			924 bp upstream
Tssr136200	transcription start site region 136200			899 bp upstream
Tssr136201	transcription start site region 136201			843 bp upstream
Tssr136202	transcription start site region 136202			781 bp upstream
Tssr136203	transcription start site region 136203			358 bp upstream
Tssr136204	transcription start site region 136204			270 bp upstream
Tssr136205	transcription start site region 136205			174 bp downstream
Tssr136206	transcription start site region 136206			213 bp downstream
Tssr136207	transcription start site region 136207			243 bp downstream