rs36411255 SNP Detail

Summary

• ID
  rs36411255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:159221832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTATAC TCTCTTTAGC
  CTGCAAACCA TTTTAAGTTT GCCATCCATA GAAGAACTCT TAAACCCAAA CCAAGTAATT
  CCTCAATATA TAATGTACAA CATGGCCAAC ACAAGTAAGC ATGGAGTGGT CATACTACAA
  GACAAATCAG GTAGGTATTT AGAAAAGAAT CTGGAATCTT TTCAAACCTA GTAACCAAAG
  R
  TGCATTTATA GGTTAGTATA GAAAGTAGAA CATTTTCCTA GGACACATTC ATTTAGCAAT
  AATGATGGAA TTTTTGGAAG TAAATATTAT TTATGCTATC ACAAAAAAGT ATTTAATTGC
  TTAAATGAAT TAATATGACT TTAAAAATAT GGCAGTGATA AACATCCAAA ATGTAGACAA
  TAAAAACTAT ATTAACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676418	NES14641269	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36411255					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676418	NES14641269	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:159221832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Depdc1a	DEP domain containing 1a			Intron
				Noncoding-Transcript-Variant
Rr588123	regulatory region 588123			1499 bp proximal
Rr588124	regulatory region 588124			1697 bp proximal