rs36410583 SNP Detail

Summary

• ID
  rs36410583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66310524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGATGT CCAGGGCATT
  GGACTCTGGC CTAGAGGGTG AAAAGCTTAA GGTATTAGGA ACATATTCGC TTGGTTATAT
  GAGCGGCCCT AGGAATGTAT AGCGAGACTG TGTAGTTTCA AAGGAGGAAT GATGCTGGCC
  TTGTGAAACA GAAGAAGTAA TCCTCAGAGC TGTACAGTCT CTTAGGTGGT GTGTTAGTCC
  R
  TCCTTCAGCA CTTAGATTTA GCTAACTTCT ATCTTCTAAC TTGTAAGGTC CCTCTTGAGA
  GCCCAGTATA TTTATCATTT TCTAAAAGAT GCTTGAAAAC AACACAACAG AACACAACAA
  ACAAAGAACA ACAATAACAG CCAGTCTCCT AGGAGCTAGG TATGTATGAG GAATGACAAG
  CAGTCAAACT CAGATTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50970316	NES13937277	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36410583					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50970316	NES13937277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66310524 () rs orientation: forward

Symbol	Name	Function Class
Gm35236	predicted gene, 35236	within coordinates
Rr2055	regulatory region 2055	414 bp distal
Rr577827	regulatory region 577827	1904 bp distal
Rr577828	regulatory region 577828	1446 bp distal
Tssr29427	transcription start site region 29427	1942 bp downstream